Basic Information
Locus ID:
AH03.1805
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the universal ribosomal protein uS19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 32731591 | 32734260 | - | AH03.1805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 27,089.81 Da | 49.34 | 88.35 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00203 | Ribosomal protein S19 | 2 | 53 | 3.7E-24 | IPR002222 |
| SUPERFAMILY | SSF54570 | Ribosomal protein S19 | 2 | 54 | 1.44E-20 | IPR023575 |
| Gene3D | G3DSA:3.30.860.10 | 30s Ribosomal Protein S19; Chain A | 1 | 69 | 8.8E-32 | IPR023575 |
| PRINTS | PR00975 | Ribosomal protein S19 family signature | 23 | 35 | 2.0E-11 | IPR002222 |
| PRINTS | PR00975 | Ribosomal protein S19 family signature | 3 | 22 | 2.0E-11 | IPR002222 |
| PRINTS | PR00975 | Ribosomal protein S19 family signature | 35 | 50 | 2.0E-11 | IPR002222 |
| Hamap | MF_00531 | 30S ribosomal protein S19 [rpsS]. | 1 | 59 | 13.043545 | IPR002222 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G09510.2 | Ribosomal protein S19 family protein. | 2.75E-38 |
| RefSeq | XP_042415991.1 | 40S ribosomal protein S15-like, partial [Zingiber officinale] | 3.1E-37 |
| O65059 | Small ribosomal subunit protein uS19 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1 | 5.05E-37 | |
| TrEMBL | A0A392TBN1 | 40S ribosomal protein S15-like (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1 | 1.78E-35 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3142.V1.1, AsparagusV1_10.1839.V1.1 ... |
| Poaceae | Echinochloa crus-galli | 10 | AH03.1805, AH03.1806, AH03.1809, BH03.1944, BH05.3340 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0533730, gene-QOZ80_6AG0534220 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.3HG0243010.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_004864, gene-QYE76_004865, gene-QYE76_004866 ... |
| Poaceae | Oryza coarctata | 3 | Oco17G004050, Oco18G003980, Oco18G004020 |
| Poaceae | Oryza sativa | 13 | LOC_Os02g17180.1, LOC_Os02g38499.1, LOC_Os02g38589.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G172800, gene-BS78_02G173600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0200764, Pt_Chr0202521, Pt_Chr0504528, Pt_Chr0504530 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G003100, Tel5E01G336100, Tel6E01G504100 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG000530 |
| Poaceae | Triticum aestivum | 14 | TraesCS3A02G310000.1, TraesCS5A02G062200.1.cds1 ... |