Basic Information
Locus ID:
AH03.1768
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 32085198 | 32086412 | + | AH03.1768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 41,415.94 Da | 50.71 | 73.44 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 177 | 220 | 1.44275E-18 | - |
| Pfam | PF13639 | Ring finger domain | 177 | 220 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 224 | 6.82E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 225 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 219 | 3.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 220 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 345 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 1.04E-44 |
| RefSeq | XP_025802331.1 | RING-H2 finger protein ATL46-like [Panicum hallii] | 9.89E-175 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 1.01E-43 | |
| TrEMBL | A0A1E5VK64 | RING-H2 finger protein ATL46 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013473 PE=4 SV=1 | 2.03E-178 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology