Basic Information
Locus ID:
AH03.1681
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 30773521 | 30779991 | - | AH03.1681 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 44,427.52 Da | 52.85 | 84.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04457 | S1_S28E | 335 | 394 | 1.15606E-35 | IPR000289 |
| Pfam | PF01200 | Ribosomal protein S28e | 333 | 393 | 3.6E-30 | IPR000289 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 330 | 394 | 7.88E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 327 | 394 | 4.0E-35 | - |
| ProSitePatterns | PS00961 | Ribosomal protein S28e signature. | 385 | 393 | - | IPR028626 |
| Hamap | MF_00292 | 30S ribosomal protein S28e [rps28e]. | 330 | 394 | 21.924957 | IPR000289 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10090.1 | Nucleic acid-binding, OB-fold-like protein. | 6.11E-28 |
| RefSeq | XP_039780686.1 | uncharacterized protein LOC120647957 [Panicum virgatum] | 2.23E-44 |
| P46302 | Small ribosomal subunit protein eS28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1 | 5.03E-33 | |
| TrEMBL | A0A1E5US74 | Lipocalin OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0023326 PE=4 SV=1 | 6.9E-44 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |