halophFGD

Basic Information

Locus ID: AH03.1550

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH03	27821440	27822774	+	AH03.1550

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.07	50,437.47 Da	53.11	81.87	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	26	62	5.8E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	10	72	1.44E-7	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	20	66	1.6E-6	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_022680036.1	uncharacterized protein LOC111256385 [Setaria italica]	4.98E-215
TrEMBL	A0A4U6VV45	F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G181900v2 PE=4 SV=1	1.09E-213

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	29	AH03.1550, AH03.1552, AH03.1569, AH03.1583, AH03.1587 ... AH03.1588, AH05.3910, AH05.3912, AH08.1325, BH03.1102, BH03.1726, BH03.1731, BH03.1750, BH03.1752, BH03.1756, BH03.1757, BH03.1759, BH03.1761, BH04.374, BH05.3930, CH03.1882, CH03.1887, CH03.1902, CH03.1903, CH03.1909, CH03.1911, CH03.1912, CH03.1913, CH05.4151
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_5BG0443750, gene-QOZ80_6AG0532110 ... gene-QOZ80_6AG0532120, gene-QOZ80_6AG0532130, gene-QOZ80_6AG0532180, gene-QOZ80_6AG0532270, gene-QOZ80_6BG0485680, gene-QOZ80_6BG0485700, gene-QOZ80_6BG0485720, gene-QOZ80_6BG0485770, gene-QOZ80_6BG0485780, gene-QOZ80_6BG0485800, gene-QOZ80_7BG0588220
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0064930.1.CDS1 ... HORVU.MOREX.r3.1HG0088780.1.CDS1, HORVU.MOREX.r3.5HG0473390.1, HORVU.MOREX.r3.5HG0473630.1.CDS1, HORVU.MOREX.r3.5HG0473650.1.CDS1
Poaceae	Lolium multiflorum	20	gene-QYE76_004511, gene-QYE76_004516, gene-QYE76_004520 ... gene-QYE76_004521, gene-QYE76_004575, gene-QYE76_004579, gene-QYE76_004584, gene-QYE76_004585, gene-QYE76_004586, gene-QYE76_004587, gene-QYE76_007693, gene-QYE76_007697, gene-QYE76_007699, gene-QYE76_007700, gene-QYE76_015274, gene-QYE76_015276, gene-QYE76_015277, gene-QYE76_015278, gene-QYE76_015279, gene-QYE76_015281
Poaceae	Oryza coarctata	8	Oco03G007580, Oco04G007920, Oco17G002730, Oco17G002750 ... Oco18G002520, Oco18G002580, Oco18G002590, Oco18G002610
Poaceae	Oryza sativa	15	LOC_Os02g17480.1, LOC_Os03g26840.1, LOC_Os09g15440.1 ... LOC_Os09g15530.1, LOC_Os09g15540.1, LOC_Os09g15550.1, LOC_Os09g15560.1, LOC_Os09g15570.1, LOC_Os09g15660.1, LOC_Os09g16810.1, LOC_Os09g17146.1, LOC_Os09g17152.1, LOC_Os09g17190.1, LOC_Os09g17530.1, LOC_Os09g17540.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G151200, gene-BS78_02G151900 ... gene-BS78_08G118700
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0303448, Pt_Chr0502216, Pt_Chr0503635, Pt_Chr0505577 ... Pt_Chr0505578, Pt_Chr0702622, Pt_Chr0702646
Poaceae	Sporobolus alterniflorus	3	Chr09G000330, Chr11G010210, Chr27G007970
Poaceae	Thinopyrum elongatum	3	Tel1E01G664100, Tel5E01G310300, Tel5E01G310600
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG038510, gene_TRIDC1AG059200 ... gene_TRIDC1BG043710, gene_TRIDC1BG043720, gene_TRIDC5AG029670, gene_TRIDC5AG029860, gene_TRIDC5BG031550
Poaceae	Triticum aestivum	27	TraesCS1A02G257600.1.cds1, TraesCS1A02G257700.1.cds1 ... TraesCS1A02G378400.1.cds1, TraesCS1B02G268100.1.cds1, TraesCS1B02G430400.1.cds1, TraesCS1B02G442900.1.cds1, TraesCS1B02G443000.1.cds1, TraesCS1D02G256900.1.cds1, TraesCS1D02G257000.1.cds1, TraesCS1D02G409200.1.cds1, TraesCS3A02G532500.1, TraesCS3B02G446900.1.cds1, TraesCS3B02G609300.1.cds1, TraesCS3B02G609700.1.cds1, TraesCS3D02G537700.1.cds1, TraesCS5A02G182500.1.cds1, TraesCS5A02G183400.1, TraesCS5A02G183500.1.cds1, TraesCS5B02G180600.1.cds1, TraesCS5B02G180700.1.cds1, TraesCS5B02G181600.1.cds1, TraesCS5B02G181800.1.cds1, TraesCS5B02G181900.1.cds1, TraesCS5D02G187000.1.cds1, TraesCS5D02G188500.1.cds1, TraesCSU02G003500.1.cds1, TraesCSU02G218700.1.cds1
Poaceae	Zea mays	1	Zm00001eb098120_P001
Poaceae	Zoysia japonica	9	nbis-gene-20097, nbis-gene-20098, nbis-gene-20099 ... nbis-gene-20103, nbis-gene-31069, nbis-gene-35534, nbis-gene-35536, nbis-gene-50864, nbis-gene-55803
Poaceae	Zoysia macrostachya	5	Zma_g32372, Zma_g32373, Zma_g32374, Zma_g32375, Zma_g5090