Basic Information
Locus ID:
AH03.1525
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 27213796 | 27222681 | + | AH03.1525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 166,267.89 Da | 50.92 | 83.93 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1028 | 1277 | 3.49133E-53 | - |
| CDD | cd09076 | L1-EN | 570 | 778 | 1.28299E-29 | - |
| Pfam | PF01535 | PPR repeat | 282 | 308 | 7.0E-4 | IPR002885 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1038 | 1275 | 5.6E-42 | IPR000477 |
| Pfam | PF01535 | PPR repeat | 158 | 187 | 4.7E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 220 | 248 | 2.3E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 383 | 431 | 1.9E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 251 | 280 | 2.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 189 | 218 | 1.6E-7 | IPR002885 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 986 | 1341 | 9.64E-20 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 570 | 765 | 4.86E-14 | IPR036691 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 248 | 346 | 4.4E-20 | IPR011990 |
| Gene3D | G3DSA:3.30.70.270 | - | 1073 | 1250 | 5.4E-8 | IPR043128 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 569 | 779 | 5.1E-24 | IPR036691 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 347 | 449 | 9.5E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 98 | 247 | 2.3E-33 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 282 | 311 | 1.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 387 | 420 | 6.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 251 | 282 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 220 | 250 | 5.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 189 | 220 | 3.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 158 | 189 | 6.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | 11.91499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 156 | 186 | 11.005202 | IPR002885 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1015 | 1277 | 21.953979 | IPR000477 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 249 | 283 | 10.939435 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | 12.024604 | IPR002885 |
| Coils | Coil | Coil | 879 | 899 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08070.2 | - | 6.91E-60 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| O23337 | Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1 | 2.15E-58 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |