halophFGD

Basic Information

Locus ID: AH03.1191

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Anaphase-promoting complex subunit 11 RING-H2 finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH03	16395020	16399667	-	AH03.1191

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.69	45,312.89 Da	62.01	63.46	-0.61

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17123	RING-like zinc finger	167	192	2.9E-9	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	167	201	1.68E-8	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	150	204	1.1E-8	IPR013083
MobiDBLite	mobidb-lite	consensus disorder prediction	284	301	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	134	156	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	279	307	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	117	156	-	-

KEGG Pathway

KO Term:

K10664 (E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G27420.1	carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.	3.31E-16
RefSeq	XP_025820155.1	E3 ubiquitin-protein ligase ATL6-like [Panicum hallii]	2.18E-33
Swiss-Prot	Q8LGA5	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2	3.27E-15
TrEMBL	A0A0E0QKF1	RING-type domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	7.99E-35

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for AH03.1191.