Basic Information
Locus ID:
AH03.1124
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 14932982 | 14937628 | + | AH03.1124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 91,052.53 Da | 48.07 | 82.03 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 742 | 783 | 3.94637E-25 | - |
| CDD | cd01989 | STK_N | 62 | 220 | 2.21494E-42 | - |
| Pfam | PF00069 | Protein kinase domain | 450 | 704 | 5.4E-41 | IPR000719 |
| Pfam | PF04564 | U-box domain | 738 | 808 | 4.2E-20 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 430 | 705 | 2.83E-66 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 73 | 183 | 6.53E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 723 | 809 | 2.38E-28 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 49 | 193 | 1.4E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 737 | 809 | 7.9E-30 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 521 | 2.6E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 522 | 718 | 2.5E-44 | - |
| SMART | SM00504 | Ubox_2 | 741 | 804 | 1.7E-32 | IPR003613 |
| SMART | SM00220 | serkin_6 | 449 | 716 | 6.0E-28 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 737 | 810 | 41.532326 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 449 | 716 | 33.276398 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 567 | 579 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| Coils | Coil | Coil | 299 | 343 | - | - |
| Coils | Coil | Coil | 351 | 371 | - | - |
| Coils | Coil | Coil | 400 | 420 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 1.34E-199 |
| RefSeq | XP_025799769.1 | U-box domain-containing protein 33-like [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 1.3E-198 | |
| TrEMBL | A0A2T7EP80 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G126700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology