Basic Information
Locus ID:
AH03.1073
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
29 kDa ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 14293054 | 14297224 | - | AH03.1073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 90,956.72 Da | 52.47 | 70.09 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 528 | 564 | 1.5E-5 | IPR005174 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 656 | 725 | 3.6E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 770 | 840 | 3.0E-14 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 208 | 251 | 2.62E-5 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 651 | 740 | 1.48E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 761 | 845 | 6.99E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 612 | 735 | 1.0E-16 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 755 | 846 | 2.5E-22 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 216 | 256 | 4.3E-5 | - |
| SMART | SM00360 | rrm1_1 | 769 | 842 | 1.3E-20 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 654 | 727 | 7.4E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 768 | 846 | 18.069229 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 653 | 731 | 14.436429 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 204 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 4.91E-36 |
| RefSeq | XP_015611610.1 | uncharacterized protein LOC107276108 [Oryza sativa Japonica Group] | 5.09E-91 |
| P28644 | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 4.31E-36 | |
| TrEMBL | B9G546 | Putative nucleic acid-binding protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_30366 PE=4 SV=1 | 1.15E-89 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology