Basic Information
Locus ID:
AH03.1047
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH03 | 13879296 | 13884609 | + | AH03.1047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 63,585.75 Da | 61.55 | 94.32 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 298 | 342 | 1.56623E-20 | - |
| CDD | cd01960 | nsLTP1 | 464 | 549 | 1.02027E-16 | - |
| Pfam | PF13639 | Ring finger domain | 298 | 340 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 289 | 346 | 4.71E-18 | - |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 464 | 551 | 7.49E-10 | IPR036312 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 348 | 1.3E-17 | IPR013083 |
| Gene3D | G3DSA:1.10.110.10 | - | 464 | 561 | 9.1E-15 | IPR036312 |
| SMART | SM00184 | ring_2 | 299 | 339 | 3.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 299 | 340 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 2.49E-145 |
| RefSeq | XP_039806820.1 | E3 ubiquitin-protein ligase At1g12760-like isoform X1 [Panicum virgatum] | 6.74E-232 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 2.39E-144 | |
| TrEMBL | A0A835EG90 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_041277 PE=4 SV=1 | 1.64E-234 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology