Basic Information
Locus ID:
AH02.990
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 10015877 | 10024107 | + | AH02.990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 119,941.93 Da | 41.18 | 79.02 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 440 | 476 | 3.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 944 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 518 | 0.25 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 829 | 1048 | 9.33E-31 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 653 | 6.41E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 762 | 1054 | 8.4E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 286 | 529 | 3.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 530 | 671 | 1.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 435 | 476 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 429 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 5.5E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 0.08 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1014 | 1046 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 818 | 860 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 565 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 568 | 611 | 1.4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.8E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 478 | 519 | 0.001 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.063193 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 477 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 477 | 8.544697 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 944 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 620 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 944 | 11.711506 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 463 | 477 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1049 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 725 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_004967836.1 | protein TPR1 isoform X1 [Setaria italica] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368R1V9 | Topless-related protein 3-like OS=Setaria italica OX=4555 GN=SETIT_5G058500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology