Basic Information
Locus ID:
AH02.65
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 904100 | 906204 | + | AH02.65 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 34,721.34 Da | 36.54 | 70.06 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 165 | 293 | 2.48226E-69 | - |
| CDD | cd16571 | RING-HC_SIAHs | 49 | 87 | 2.56726E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 93 | 292 | 2.8E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 90 | 6.48E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 104 | 296 | 1.05E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 163 | 292 | 5.2E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 159 | 6.9E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 93 | 8.8E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 51 | 87 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 104 | 164 | 14.279369 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 8.08E-191 |
| RefSeq | XP_025816186.1 | E3 ubiquitin-protein ligase SINAT5-like [Panicum hallii] | 1.06E-233 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 7.74E-190 | |
| TrEMBL | A0A2S3HZ82 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_5G535700 PE=3 SV=1 | 1.8E-231 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology