Basic Information
Locus ID:
AH02.601
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MSP (Major sperm protein) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 5797959 | 5800903 | - | AH02.601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 45,015.52 Da | 27.56 | 90.33 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 16 | 268 | 3.0E-44 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 293 | 372 | 4.5E-14 | IPR000535 |
| SUPERFAMILY | SSF49354 | PapD-like | 293 | 396 | 5.49E-18 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 271 | 2.35E-65 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 86 | 3.1E-21 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 289 | 391 | 1.3E-18 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 288 | 1.7E-48 | - |
| SMART | SM00220 | serkin_6 | 13 | 278 | 1.3E-25 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 256 | 389 | 12.04585 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 271 | 33.332932 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 147 | 159 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 41 | - | IPR017441 |
| Coils | Coil | Coil | 263 | 283 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 7.43E-44 |
| RefSeq | XP_037426732.1 | putative receptor-like protein kinase At4g00960 isoform X2 [Triticum dicoccoides] | 4.1E-203 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 3.77E-41 | |
| TrEMBL | A0A0A8ZAT5 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 8.4E-239 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology