Basic Information
Locus ID:
AH02.491
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 4822458 | 4826730 | + | AH02.491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 70,848.06 Da | 55.53 | 68.02 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 19 | 49 | 9.71624E-6 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 372 | 501 | 1.03488E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 177 | 347 | 1.6E-49 | IPR011545 |
| Pfam | PF00397 | WW domain | 18 | 48 | 1.2E-7 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 384 | 492 | 1.6E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 225 | 508 | 1.42E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 11 | 49 | 7.95E-9 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 126 | 361 | 1.1E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 362 | 534 | 6.3E-60 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 54 | 5.5E-6 | - |
| SMART | SM00456 | ww_5 | 17 | 50 | 2.3E-7 | IPR001202 |
| SMART | SM00490 | helicmild6 | 412 | 492 | 3.2E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 172 | 375 | 1.7E-63 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 184 | 358 | 31.65361 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 153 | 181 | 10.848828 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 16 | 50 | 11.7036 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 531 | 25.915192 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 304 | 312 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 22 | 48 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 93 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 1.68E-266 |
| RefSeq | XP_004968355.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X1 [Setaria italica] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 2.4600000000001E-311 | |
| TrEMBL | A0A2T7DRR0 | DEAD-box ATP-dependent RNA helicase 14 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G495500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology