Basic Information
Locus ID:
AH02.477
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 4732201 | 4738721 | - | AH02.477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 180,030.78 Da | 44.27 | 98.70 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 479 | 766 | 3.81661E-97 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1413 | 1633 | 5.60663E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 792 | 992 | 7.08067E-112 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1096 | 1390 | 1.35533E-90 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1098 | 1340 | 2.1E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 810 | 944 | 4.0E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1432 | 1580 | 2.8E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 482 | 745 | 9.9E-21 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 789 | 1014 | 2.56E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1404 | 1645 | 2.66E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1084 | 1396 | 5.36E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 468 | 774 | 1.01E-30 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 775 | 1024 | 8.4E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1059 | 1396 | 4.2E-64 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 457 | 774 | 5.5E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1399 | 1651 | 2.1E-77 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1441 | 1632 | 8.2E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 819 | 992 | 1.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 792 | 1015 | 22.862585 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 478 | 758 | 29.952755 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1098 | 1378 | 37.377724 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1415 | 1649 | 16.89356 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 917 | 931 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1070 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596584.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UFR8 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_5G119400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology