Basic Information
Locus ID:
AH02.4654
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 60946622 | 60952960 | + | AH02.4654 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 93,080.30 Da | 49.40 | 78.94 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13242 | HAD-hyrolase-like | 755 | 808 | 5.4E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 328 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 373 | 5.5E-4 | IPR001680 |
| SUPERFAMILY | SSF56784 | HAD-like | 555 | 814 | 9.71E-20 | IPR036412 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 158 | 443 | 2.17E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 116 | 446 | 4.4E-111 | IPR015943 |
| Gene3D | G3DSA:3.40.50.1000 | - | 684 | 825 | 2.2E-35 | IPR023214 |
| Gene3D | G3DSA:1.10.150.450 | - | 544 | 638 | 1.3E-15 | - |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 285 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 373 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 416 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 419 | 473 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 202 | 160.0 | IPR001680 |
| TIGRFAM | TIGR01509 | HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 | 752 | 798 | 1.7E-9 | IPR006439 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 382 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 328 | 11.075592 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 521 | - | - |
| SFLD | SFLDG01129 | C1.5: HAD, Beta-PGM, Phosphatase Like | 557 | 822 | 5.3E-16 | - |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 557 | 822 | 5.3E-16 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 3.84E-206 |
| RefSeq | XP_034595902.1 | protein FIZZY-RELATED 3 [Setaria viridis] | 1.84E-275 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 5.47E-206 | |
| TrEMBL | A0A811P597 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS23046 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology