Basic Information
Locus ID:
AH02.4481
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 59869378 | 59878201 | - | AH02.4481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 80,754.07 Da | 32.61 | 83.97 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 85 | 347 | 4.6E-80 | IPR013765 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 443 | 752 | 5.3E-101 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 443 | 752 | 1.54E-92 | IPR017853 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 84 | 334 | 1.06E-40 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 350 | 403 | 1.09E-5 | IPR023400 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 443 | 752 | 1.7E-124 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 111 | 417 | 2.9E-90 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 276 | 352 | 16.861776 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 112 | 270 | 27.728306 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 241 | 270 | 2.5E-45 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 289 | 317 | 2.5E-45 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 323 | 352 | 2.5E-45 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 203 | 232 | 2.5E-45 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 170 | 199 | 2.5E-45 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 376 | 393 | 2.5E-45 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 1.95E-116 |
| RefSeq | XP_034585641.1 | DNA repair protein recA homolog 2, mitochondrial-like isoform X1 [Setaria viridis] | 7.18E-260 |
| P15737 | Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare OX=4513 PE=1 SV=1 | 5.56E-120 | |
| TrEMBL | K3XF24 | Glucan endo-1,3-beta-D-glucosidase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology