Basic Information
Locus ID:
AH02.4409
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 59356708 | 59357460 | + | AH02.4409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 26,942.28 Da | 53.37 | 73.52 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 180 | 224 | 8.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 229 | 1.66E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 226 | 6.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 180 | 223 | 2.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 180 | 224 | 12.725326 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039812141.1 | uncharacterized protein LOC120675118 [Panicum virgatum] | 2.93E-107 |
| TrEMBL | A0A2T8IIP6 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G030700 PE=4 SV=1 | 1.43E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.4409, BH02.4448, CH02.1430, CH02.4496, CH02.4497 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0312920.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016886, gene-QYE76_016887, gene-QYE76_057622 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G392400 |