Basic Information
Locus ID:
AH02.4343
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 58629434 | 58630971 | - | AH02.4343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 40,684.85 Da | 47.55 | 81.15 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 327 | 367 | 3.0E-6 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 119 | 236 | 8.37E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 373 | 4.88E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 48 | 102 | 9.68E-8 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 312 | 372 | 3.3E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 101 | 307 | 3.6E-17 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 325 | 367 | 11.092784 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 3.46E-117 |
| RefSeq | XP_039812977.1 | F-box protein At1g67340-like [Panicum virgatum] | 8.53E-227 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 3.33E-116 | |
| TrEMBL | A0A8T0SBV7 | MYND-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG264400 PE=4 SV=1 | 1.93E-225 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology