Basic Information
Locus ID:
AH02.4314
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 58397271 | 58398188 | - | AH02.4314 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 32,565.86 Da | 73.32 | 52.30 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 257 | 294 | 4.10012E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 256 | 300 | 9.6E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 301 | 8.95E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 305 | 2.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 257 | 294 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 257 | 295 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 2.02E-25 |
| RefSeq | XP_008656941.1 | uncharacterized protein LOC103636359 [Zea mays] | 1.86E-76 |
| TrEMBL | A0A1E5VXQ1 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009104 PE=4 SV=1 | 6.73E-77 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology