Basic Information
Locus ID:
AH02.3943
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 55421665 | 55430964 | - | AH02.3943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 127,523.66 Da | 41.83 | 67.68 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 834 | 1004 | 4.88E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 714 | 1022 | 3.7E-14 | IPR015943 |
| SMART | SM00384 | AT_hook_2 | 393 | 405 | 62.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 238 | 250 | 0.61 | IPR017956 |
| SMART | SM00320 | WD40_4 | 961 | 1000 | 42.0 | IPR001680 |
| SMART | SM00384 | AT_hook_2 | 555 | 567 | 4.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 636 | 648 | 160.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 299 | 311 | 0.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 197 | 209 | 0.26 | IPR017956 |
| SMART | SM00320 | WD40_4 | 856 | 899 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 903 | 942 | 7.3 | IPR001680 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 235 | 246 | - | IPR000637 |
| PRINTS | PR00929 | AT-hook-like domain signature | 236 | 247 | 2.3E-11 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 297 | 307 | 2.3E-11 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 197 | 207 | 2.3E-11 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 224 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19485.1 | Transducin/WD40 repeat-like superfamily protein. | 4.31E-79 |
| RefSeq | XP_025815071.1 | uncharacterized protein LOC112892172 isoform X1 [Panicum hallii] | 0 |
| TrEMBL | A0A3L6RL10 | General transcription factor 3C polypeptide 2 OS=Panicum miliaceum OX=4540 GN=C2845_PM13G13950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15066 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14440 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031016 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g159850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27523, Sbi_jg33061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7828 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012238 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71463, Sgl71464, Sgl75049, Sgl75050 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005281, gene:ENSEOMG00000037969 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30085670 |
| Apiaceae | Apium graveolens | 1 | Ag3G00606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G018550 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.632.V1.1, AsparagusV1_Unassigned.695.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G00772, Ftri12G13180, Ftri12G33984 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19485.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006802m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g008220.2N, BniB04g034220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1471 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1521, Cgl02G1530 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15840, gene.Cymno10g06170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0230s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6389, nbisL1-mrna-6391 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.435 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002039, Pov_00023493, Pov_00032255 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09176, Lb7G33630, Lb7G33631 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3943, BH02.3963, BH07.4273 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040550, gene-QOZ80_1BG0090600 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0088990.1, HORVU.MOREX.r3.3HG0300870.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056501 |
| Poaceae | Oryza coarctata | 2 | Oco01G025400, Oco02G026310 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g63910.1, LOC_Os07g27140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G343100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105919, Pt_Chr0105956, Pt_Chr0601406, Pt_Chr0601465 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G004080, Chr02G004090, Chr05G029200, Chr16G015830 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G665400, Tel3E01G590900, Tel5E01G564200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG059300, gene_TRIDC1BG068040 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G402200.1, TraesCS1B02G431300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11324 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9045 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2977, evm.TU.LG16.630 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6160 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4512 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4019 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.462 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016780 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7637 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13609, nbisL1-mrna-13610 |
| Salicaceae | Populus euphratica | 4 | populus_peu07853, populus_peu10811, populus_peu10812 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629841 |
| Solanaceae | Solanum chilense | 1 | SOLCI000909700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029362 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.1846_chr01_+, gene_5677, gene_6689 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2494, TC07G0798 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19610.v3.1 |