Basic Information
Locus ID:
AH02.3934
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 55352288 | 55367726 | - | AH02.3934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 86,137.17 Da | 48.12 | 82.08 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 273 | 379 | 4.13302E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 556 | 601 | 3.1E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 279 | 408 | 6.8E-10 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 539 | 602 | 1.65E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 665 | 744 | 7.94E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 160 | 415 | 5.06E-24 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 536 | 607 | 7.1E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 664 | 733 | 1.2E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 158 | 419 | 9.8E-30 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 665 | 731 | 1.1E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 538 | 602 | 5.3E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 222 | 398 | 5.2E-12 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 163 | 411 | 18.919502 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 537 | 603 | 11.334196 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 660 | 732 | 12.3538 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| Coils | Coil | Coil | 584 | 604 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 3.92E-208 |
| RefSeq | XP_039811130.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Panicum virgatum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 3.78E-207 | |
| TrEMBL | A0A2T7DEA0 | protein-serine/threonine phosphatase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G085500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology