Basic Information
Locus ID:
AH02.3778
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 53995839 | 54000938 | - | AH02.3778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 53,947.74 Da | 47.47 | 90.10 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09254 | AP_delta-COPI_MHD | 272 | 486 | 6.27154E-88 | - |
| CDD | cd14830 | Delta_COP_N | 4 | 133 | 4.97259E-82 | - |
| Pfam | PF00928 | Adaptor complexes medium subunit family | 271 | 466 | 1.4E-23 | IPR028565 |
| SUPERFAMILY | SSF64356 | SNARE-like | 5 | 142 | 9.16E-28 | IPR011012 |
| SUPERFAMILY | SSF49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 270 | 488 | 1.57E-24 | IPR036168 |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 274 | 466 | 3.3E-6 | - |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 354 | 451 | 3.3E-6 | - |
| Gene3D | G3DSA:3.30.450.60 | - | 3 | 141 | 3.4E-12 | - |
| ProSiteProfiles | PS51072 | Mu homology domain (MHD) profile. | 271 | 489 | 30.89904 | IPR028565 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05010.1 | clathrin adaptor complexes medium subunit family protein. | 3.69E-201 |
| RefSeq | XP_025819573.1 | coatomer subunit delta-3-like [Panicum hallii] | 6.53E-309 |
| P49661 | Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0833700 PE=2 SV=2 | 3.25E-277 | |
| TrEMBL | K3XGQ5 | Coatomer subunit delta OS=Setaria italica OX=4555 GN=SETIT_5G370400v2 PE=3 SV=1 | 3.8900000001708E-314 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26429, jg28366, jg30064 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_10486, gene_15817, gene_19740 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010639 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g165740, BVRB_8g197370, BVRB_9g219960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40714, Sbi_jg50723 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2278 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005227, GOSA_00006366 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01794, Sgl06954, Sgl55978, Sgl61150 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011885, gene:ENSEOMG00000018025 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0010730, CQ.Regalona.r1.7BG0010380 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30079110, pistato.v30079140, pistato.v30111950 ... |
| Apiaceae | Apium graveolens | 2 | Ag6G01291, Ag6G02750 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006200, scaffold008549G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717273, gene-LOC103723959 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3430.V1.1, AsparagusV1_08.2817.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G23899, Ftri12G04119, Ftri6G30769 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013243m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37790.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g055610.2N, BniB05g029420.2N, BniB08g002010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1578, Ceq08G1941 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1694, Cgl08G2018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00026.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g16530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2185 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.392 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026743 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06882, Lb2G11563 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3778, AH09.2359, BH02.3790, BH07.4103, BH09.2563 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038900, gene-QOZ80_1BG0088920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0064240.1, HORVU.MOREX.r3.3HG0303600.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013437, gene-QYE76_013473, gene-QYE76_055562 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G024160, Oco09G005500, Oco09G006330, Oco10G006490 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g61710.1, LOC_Os05g24601.1, LOC_Os08g28080.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G326700, gene-BS78_04G121900 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0505134, Pt_Chr0505382, Pt_Chr0602026 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G033450, Chr19G006290, Chr19G006380, Chr24G005370 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G408100, Tel3E01G564600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG037070, gene_TRIDC1BG042050 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G246900.1, TraesCS1B02G257500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb138410_P003, Zm00001eb411050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1098 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6399 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1483, evm.TU.LG11.833, evm.TU.LG18.1180 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00240, gene.Posoc07g15660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1003 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13485 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9239 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.269, evm.TU.utg000004l.270 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003991 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7699 |
| Salicaceae | Populus euphratica | 3 | populus_peu29103, populus_peu29104, populus_peu30490 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598636 |
| Solanaceae | Solanum chilense | 2 | SOLCI002910600, SOLCI003632500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002414, gene-LOC107006198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10596_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0639 |
| Zosteraceae | Zostera marina | 2 | Zosma03g17550.v3.1, Zosma03g18220.v3.1 |