Basic Information
Locus ID:
AH02.3684
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine Rich repeats (2 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 53217891 | 53231472 | + | AH02.3684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.16 | 176,365.67 Da | 60.41 | 70.86 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1358 | 1624 | 7.78399E-85 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 1196 | 1218 | 0.0044 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1356 | 1620 | 1.4E-38 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1037 | 1073 | 5.8E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 1049 | 1237 | 9.83E-33 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1356 | 1620 | 2.83E-58 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1428 | 1640 | 3.0E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1150 | 1238 | 1.0E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1038 | 1149 | 8.1E-23 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1320 | 1427 | 3.3E-19 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1352 | 1629 | 33.488407 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1358 | 1380 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 820 | 929 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1303 | 1326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 182 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58300.1 | Leucine-rich repeat protein kinase family protein. | 3.69E-197 |
| RefSeq | XP_002456542.1 | probable inactive receptor kinase At5g58300 [Sorghum bicolor] | 0 |
| Q9LVM0 | Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana OX=3702 GN=At5g58300 PE=1 SV=1 | 3.54E-196 | |
| TrEMBL | A0A811NSG7 | Protein kinase domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS19938 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14679, jg14681, jg3149 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14602 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031572 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156700 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2117, Sbi_jg34393 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2651 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005848 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12791, Sgl74724 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009449, gene:ENSEOMG00000034192 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0019760, CQ.Regalona.r1.7AG0023280 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30269440 |
| Apiaceae | Apium graveolens | 1 | Ag10G00998 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G004770, COCNU_04G012300, COCNU_16G005590 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702157, gene-LOC103716682, gene-LOC103722179 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3310.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G11159, Ftri9G01505 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020404m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07110.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g055870.2N, BniB07g024600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0868 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0886 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11750, gene.Cymno05g12820 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g10680, gene.Thate01g29720, gene.Thate02g15750 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12526, nbisL1-mrna-12527, nbisL1-mrna-5362 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.844 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002584 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25636 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3684, AH05.2013, BH02.3264, BH05.2152, CH02.3970 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0087910, gene-QOZ80_5AG0369200 ... |
| Poaceae | Oryza coarctata | 4 | Oco01G023350, Oco02G024110, Oco09G012350, Oco10G012470 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G317200, gene-BS78_09G182700 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0504553, Pt_Chr0504561, Pt_Chr0601795, Pt_Chr0601805 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G018370, Chr02G006300, Chr03G018820, Chr05G027080 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G488800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG044810, gene_TRIDC3AG049330 ... |
| Poaceae | Zea mays | 4 | Zm00001eb149660_P003, Zm00001eb290760_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11587, nbis-gene-14260, nbis-gene-25366 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26992, Zma_g28450, Zma_g8884 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1532, evm.TU.LG26.131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27220 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60379.3, evm.TU.60380.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5700 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9483 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3599 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.320 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016839 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4882 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13866 |
| Salicaceae | Populus euphratica | 2 | populus_peu11532, populus_peu25238 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631179 |
| Solanaceae | Solanum chilense | 1 | SOLCI000092400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031771 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1624_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2349, TC07G0954 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29160.v3.1 |