Basic Information
Locus ID:
AH02.3586
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 52337239 | 52338210 | + | AH02.3586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 36,294.23 Da | 67.86 | 60.37 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 189 | 231 | 2.63344E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 2.8E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 2.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 238 | 1.13E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 237 | 5.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 230 | 4.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 231 | 12.002429 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 263 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 6.49E-67 |
| RefSeq | XP_034594707.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 2.45E-221 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 6.27E-66 | |
| TrEMBL | A0A4U6UTB6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_5G355700v2 PE=4 SV=1 | 5.54E-220 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology