Basic Information
Locus ID:
AH02.353
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 3547842 | 3554259 | - | AH02.353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 60,251.10 Da | 46.09 | 81.62 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 289 | 323 | 5.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 284 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 131 | 163 | 2.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 423 | 1.28E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 248 | 431 | 1.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 124 | 247 | 2.6E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 324 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 240 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 284 | 4.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 294 | 333 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 293 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 172 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 163 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 285 | 10.495596 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 271 | 285 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 271 | 285 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 311 | 325 | 1.4E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 1.95E-56 |
| RefSeq | XP_039811404.1 | zinc finger CCCH domain-containing protein 17-like isoform X1 [Panicum virgatum] | 1.18E-189 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 4.66E-78 | |
| TrEMBL | A0A3L6SKU6 | Zinc finger CCCH domain-containing protein 17-like OS=Panicum miliaceum OX=4540 GN=C2845_PM07G37190 PE=4 SV=1 | 3.27E-191 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology