Basic Information
Locus ID:
AH02.3489
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 51469287 | 51471831 | - | AH02.3489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 69,630.82 Da | 46.13 | 87.42 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 27 | 133 | 4.1E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 506 | 4.4E-95 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 118 | 9.42E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 167 | 1.2E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 137 | 4.4E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 101 | 10.778367 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 530 | 93.86792 | IPR027356 |
| Coils | Coil | Coil | 592 | 612 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 1.57E-217 |
| RefSeq | XP_039813514.1 | BTB/POZ domain-containing protein At5g03250-like isoform X1 [Panicum virgatum] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 1.51E-216 | |
| TrEMBL | K3XQG5 | BTB/POZ domain-containing protein OS=Setaria italica OX=4555 GN=101759219 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology