Basic Information
Locus ID:
AH02.3484
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 51412983 | 51423375 | - | AH02.3484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 117,801.45 Da | 53.49 | 69.52 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 493 | 759 | 1.14648E-59 | - |
| CDD | cd18793 | SF2_C_SNF | 909 | 1007 | 4.19936E-46 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 511 | 837 | 6.7E-47 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 875 | 904 | 6.8E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 912 | 997 | 2.1E-11 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 488 | 765 | 7.17E-27 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 768 | 1053 | 5.0E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 469 | 772 | 7.7E-42 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 774 | 1054 | 1.9E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 489 | 738 | 2.4E-8 | IPR014001 |
| SMART | SM00490 | helicmild6 | 914 | 997 | 1.2E-17 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 881 | 1050 | 12.346328 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 875 | 899 | 8.756769 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 890 | 899 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 655 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 1.07E-215 |
| RefSeq | XP_025814745.1 | helicase-like transcription factor CHR28 isoform X4 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 2.03E-200 | |
| TrEMBL | A0A3L6R230 | Putative ATP-dependent helicase C23E6.02-like isoform X1 OS=Panicum miliaceum OX=4540 GN=C2845_PM08G27460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology