Basic Information
Locus ID:
AH02.3457
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CT11-RanBPM
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 51134503 | 51149681 | - | AH02.3457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 160,277.56 Da | 45.37 | 83.98 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 921 | 1050 | 2.17376E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 1135 | 1264 | 3.77729E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 1325 | 1451 | 4.08188E-44 | IPR033734 |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 746 | 884 | 1.9E-32 | IPR024964 |
| Pfam | PF01419 | Jacalin-like lectin domain | 1322 | 1451 | 3.3E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 1135 | 1264 | 2.3E-27 | IPR001229 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 188 | 334 | 5.4E-45 | IPR013103 |
| Pfam | PF01419 | Jacalin-like lectin domain | 921 | 1049 | 3.5E-32 | IPR001229 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 183 | 323 | 3.38E-8 | IPR043502 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 910 | 1049 | 5.36E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 1309 | 1451 | 2.49E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 1119 | 1264 | 7.46E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1113 | 1264 | 4.1E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 901 | 1050 | 5.8E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1306 | 1451 | 5.3E-48 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 921 | 1051 | 1.3E-41 | IPR001229 |
| SMART | SM00668 | ctlh | 744 | 801 | 1.3E-10 | IPR006595 |
| SMART | SM00757 | toby_final6 | 797 | 892 | 3.1E-28 | IPR013144 |
| SMART | SM00915 | Jacalin_2 | 1135 | 1266 | 9.8E-39 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 1322 | 1452 | 4.9E-36 | IPR001229 |
| SMART | SM00667 | Lish | 705 | 737 | 4.5E-4 | IPR006594 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1311 | 1452 | 48.103855 | IPR001229 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 705 | 737 | 9.666782 | IPR006594 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 910 | 1051 | 48.535301 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1124 | 1266 | 47.381657 | IPR001229 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 744 | 801 | 12.19677 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 398 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 1.79E-179 |
| RefSeq | XP_025819306.1 | jacalin-related lectin 3 [Panicum hallii] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 2.11E-178 | |
| TrEMBL | A0A3L6SIW4 | Jacalin-type lectin domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G24710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology