HalophFGD

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Basic Information
Locus ID: AH02.3274
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Clathrin adaptor complex small chain
Maps and Mapping Data
Chromosome Start End Strand ID
AH02 49363362 49366986 - AH02.3274
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.00 37,340.33 Da 47.99 98.25 -0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd14829 Zeta-COP 115 323 6.40825E-58 -
Pfam PF01217 Clathrin adaptor complex small chain 235 325 1.3E-13 IPR022775
SUPERFAMILY SSF64356 SNARE-like 235 327 4.58E-20 IPR011012
Gene3D G3DSA:3.30.450.60 - 106 328 7.6E-38 -
KEGG Pathway
KO Term:
K20472 (coatomer subunit zeta)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G08520.1 SNARE-like superfamily protein. 5.11E-52
RefSeq XP_003564572.1 coatomer subunit zeta-3 [Brachypodium distachyon] 8.8E-74
Swiss-Prot Q9MAX5 Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 SV=1 1.02E-66
TrEMBL I1HT77 Coatomer subunit zeta OS=Brachypodium distachyon OX=15368 GN=100838162 PE=3 SV=1 1.99E-72
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 9 AH02.3274, AH03.525, AH08.1768, BH02.3853, BH07.216 ...
CH01.3963, CH02.2949, CH02.2950, CH08.2705
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.