Basic Information
Locus ID:
AH02.3059
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 46727942 | 46729357 | - | AH02.3059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 46,510.24 Da | 52.30 | 95.16 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 350 | 389 | 1.4E-5 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 116 | 365 | 2.75E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 52 | 8.5E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 53 | 4.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 90 | 361 | 5.2E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 59 | 9.02057 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26922.1 | F-box/RNI-like superfamily protein. | 5.2E-17 |
| RefSeq | XP_039813417.1 | F-box/FBD/LRR-repeat protein At1g13570-like [Panicum virgatum] | 9.53E-222 |
| Q9LJF8 | F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2 | 5.11E-16 | |
| TrEMBL | A0A8T0S144 | FBD domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG478186 PE=4 SV=1 | 2.16E-220 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G019960, Oco01G019970, Oco02G019800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52970.1, LOC_Os01g52980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G264700 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G464000, Tel3E01G464100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG041760, gene_TRIDC3AG041770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G282200.1, TraesCS3A02G282300.1 ... |