Basic Information
Locus ID:
AH02.3029
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 46534997 | 46539804 | + | AH02.3029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 86,973.95 Da | 56.13 | 78.46 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 591 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 642 | 675 | 0.095 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 466 | 778 | 4.23E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 28 | 246 | 7.43E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 30 | 250 | 1.5E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 443 | 780 | 2.1E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 551 | 591 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 739 | 778 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 637 | 675 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 498 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 723 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 548 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 633 | 0.14 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 644 | 677 | 9.731054 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 558 | 593 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 644 | 677 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 238 | 11.425232 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 600 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 662 | 676 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 578 | 592 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 578 | 592 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 535 | 549 | 2.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 662 | 676 | 2.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 130 | - | - |
| Coils | Coil | Coil | 241 | 271 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 4.05E-278 |
| RefSeq | XP_004969806.1 | protein SPA1-RELATED 4 isoform X1 [Setaria italica] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 3.89E-277 | |
| TrEMBL | K3XER1 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101783393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology