Basic Information
Locus ID:
AH02.3022
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 46483134 | 46489022 | + | AH02.3022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 132,096.75 Da | 45.06 | 72.95 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 1005 | 1104 | 1.38044E-17 | IPR003340 |
| Pfam | PF03108 | MuDR family transposase | 179 | 229 | 2.7E-9 | IPR004332 |
| Pfam | PF04434 | SWIM zinc finger | 618 | 644 | 1.7E-7 | IPR007527 |
| Pfam | PF10551 | MULE transposase domain | 365 | 458 | 1.5E-16 | IPR018289 |
| Pfam | PF02362 | B3 DNA binding domain | 1019 | 1104 | 7.5E-12 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 1002 | 1107 | 2.75E-18 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 998 | 1108 | 4.9E-20 | IPR015300 |
| SMART | SM00575 | 26again6 | 622 | 649 | 9.8E-10 | IPR006564 |
| SMART | SM01019 | B3_2 | 1007 | 1107 | 4.0E-13 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 1029 | 1107 | 12.435352 | IPR003340 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 615 | 647 | 10.274183 | IPR007527 |
| ProSitePatterns | PS01007 | Transposases, Mutator family, signature. | 430 | 454 | - | IPR001207 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 784 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015613434.1 | uncharacterized protein LOC107279021 [Oryza sativa Japonica Group] | 3.16E-305 |
| Q5JNA1 | B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0723700 PE=2 SV=1 | 9.16E-48 | |
| TrEMBL | Q8LNV8 | Putative mutator protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0012L23.50 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3022, BH09.1174, CH01.3035 |
| Poaceae | Lolium multiflorum | 19 | gene-QYE76_001585, gene-QYE76_001690, gene-QYE76_005059 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026660, Chr03G003120, Chr07G005200, Chr09G014280 ... |