Basic Information
Locus ID:
AH02.2932
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 45484144 | 45494339 | + | AH02.2932 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 81,974.80 Da | 52.71 | 68.59 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 530 | 566 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 611 | 3.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 621 | 660 | 1.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 406 | 723 | 9.83E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 353 | 738 | 8.4E-95 | IPR015943 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 5.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 660 | 5.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 566 | 6.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 492 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 673 | 720 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 660 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 575 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 611 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 611 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 627 | 660 | 10.469233 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 8.57E-201 |
| RefSeq | XP_004969719.1 | WD-40 repeat-containing protein MSI4 [Setaria italica] | 2.14E-254 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 8.23E-200 | |
| TrEMBL | K3XHN1 | CAF1C_H4-bd domain-containing protein OS=Setaria italica OX=4555 GN=101782310 PE=3 SV=1 | 4.84E-253 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH02.2932.