Basic Information
Locus ID:
AH02.290
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 2843439 | 2883584 | + | AH02.290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 136,580.31 Da | 34.40 | 90.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 318 | 1.17913E-74 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 164 | 6.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 3.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 1.5E-4 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 349 | 769 | 2.3E-128 | IPR006692 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 212 | 292 | 1.0E-4 | IPR024977 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 816 | 1220 | 1.1E-174 | IPR010714 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 238 | 548 | 2.62E-13 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 316 | 5.49E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 320 | 2.3E-123 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 641 | 813 | 4.0E-61 | - |
| SMART | SM00320 | WD40_4 | 82 | 121 | 5.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 7.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 233 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 318 | 72.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 164 | 4.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 19.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1216 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 165 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 235 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 277 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 242 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.416506 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 220 | 234 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 1.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 880 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_039782899.1 | coatomer subunit alpha-3 [Panicum virgatum] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0NB33 | Coatomer subunit alpha OS=Panicum virgatum OX=38727 GN=PVAP13_9KG035380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology