Basic Information
Locus ID:
AH02.2831
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 44240480 | 44256392 | + | AH02.2831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 277,619.59 Da | 42.21 | 81.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1672 | 1852 | 6.4563E-78 | - |
| CDD | cd03390 | PAP2_containing_1_like | 61 | 250 | 2.09948E-77 | - |
| CDD | cd00303 | retropepsin_like | 1390 | 1467 | 3.88803E-7 | - |
| Pfam | PF01569 | PAP2 superfamily | 106 | 251 | 1.1E-28 | IPR000326 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1917 | 1986 | 1.2E-15 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 718 | 809 | 4.7E-13 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1690 | 1852 | 2.5E-21 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1632 | 2007 | 1.42E-113 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 2181 | 2292 | 4.74E-17 | IPR012337 |
| SUPERFAMILY | SSF48317 | Acid phosphatase/Vanadium-dependent haloperoxidase | 26 | 256 | 5.89E-39 | IPR036938 |
| Gene3D | G3DSA:3.30.70.270 | - | 1715 | 1852 | 4.1E-61 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1862 | 1945 | 3.7E-20 | IPR043128 |
| Gene3D | G3DSA:3.10.20.370 | - | 1946 | 1994 | 1.1E-6 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2228 | 2318 | 1.7E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 2172 | 2227 | 1.6E-8 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1633 | 1777 | 4.1E-61 | - |
| Gene3D | G3DSA:1.20.144.10 | Phosphatidic acid phosphatase type 2/haloperoxidase | 30 | 258 | 6.1E-37 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1370 | 1480 | 5.5E-11 | IPR021109 |
| SMART | SM00014 | acid_phosph_2 | 104 | 247 | 4.0E-19 | IPR000326 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1280 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1492 | 1537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2051 | 2089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1520 | 1537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2051 | 2081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1492 | 1511 | - | - |
| Coils | Coil | Coil | 1230 | 1250 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15080.1 | lipid phosphate phosphatase 2. Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. | 6.87E-128 |
| RefSeq | XP_050207440.1 | uncharacterized protein LOC126656861 [Mercurialis annua] | 1.51E-216 |
| Q9XI60 | Lipid phosphate phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=LPP2 PE=2 SV=1 | 6.59E-127 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |