Basic Information
Locus ID:
AH02.2625
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 41836174 | 41839418 | + | AH02.2625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 34,923.79 Da | 43.46 | 73.75 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 99 | 309 | 4.49414E-86 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 99 | 200 | 2.0E-13 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 97 | 213 | 3.53E-16 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 76 | 237 | 8.9E-51 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 243 | 309 | 1.5E-10 | - |
| SMART | SM00232 | pad1_6 | 96 | 227 | 1.1E-7 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 97 | 226 | 26.818054 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 2.86E-78 |
| RefSeq | XP_039809963.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Panicum virgatum] | 1.54E-181 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 2.75E-77 | |
| TrEMBL | A0A2S3HT89 | MPN domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G218200 PE=3 SV=1 | 5.51E-177 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology