Basic Information
Locus ID:
AH02.2591
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 41374813 | 41392868 | - | AH02.2591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 279,432.91 Da | 55.91 | 75.36 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02992 | Transposase family tnp2 | 302 | 515 | 8.6E-90 | IPR004242 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 958 | 1023 | 7.8E-14 | IPR025312 |
| Pfam | PF05871 | ESCRT-II complex subunit | 2299 | 2429 | 4.0E-38 | IPR008570 |
| Pfam | PF13963 | Transposase-associated domain | 5 | 78 | 4.4E-18 | IPR029480 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 698 | 804 | 5.0E-36 | IPR025452 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 2297 | 2393 | 3.81E-28 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 2389 | 2461 | 3.45E-12 | IPR036390 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2015 | 2116 | 5.89E-7 | IPR038765 |
| Gene3D | G3DSA:1.10.10.10 | - | 2389 | 2462 | 1.6E-22 | IPR036388 |
| Gene3D | G3DSA:1.10.10.570 | - | 2290 | 2387 | 1.7E-28 | IPR014041 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1361 | 1390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1767 | 1876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1046 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1913 | 1942 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1792 | 1813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1353 | 1399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1832 | 1876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1175 | - | - |
| Coils | Coil | Coil | 1653 | 1687 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19003.1 | E2F/DP family winged-helix DNA-binding domain. | 2.07E-82 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q8VZC9 | Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 GN=VPS25 PE=1 SV=1 | 1.99E-81 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |