Basic Information
Locus ID:
AH02.2384
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 38744886 | 38749350 | + | AH02.2384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 89,141.53 Da | 39.89 | 87.05 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 511 | 644 | 4.82955E-22 | - |
| Pfam | PF17862 | AAA+ lid domain | 665 | 709 | 2.3E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 513 | 643 | 1.1E-39 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 705 | 9.89E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 646 | 777 | 3.9E-96 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 472 | 781 | 3.9E-96 | IPR027417 |
| SMART | SM00382 | AAA_5 | 509 | 646 | 5.6E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 616 | 635 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 764 | - | - |
| Coils | Coil | Coil | 695 | 716 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 6.55E-239 |
| RefSeq | XP_025814082.1 | peroxisomal biogenesis factor 6-like [Panicum hallii] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 1.83E-63 | |
| TrEMBL | A0A2S3HTS8 | AAA domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G238600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology