Basic Information
Locus ID:
AH02.235
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 2350537 | 2355071 | + | AH02.235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 79,084.82 Da | 50.23 | 60.67 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12438 | RRM_CNOT4 | 13 | 108 | 1.53517E-44 | IPR034261 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 95 | 4.5E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 16 | 113 | 2.85E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 19 | 97 | 2.5E-22 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 19 | 97 | 7.9E-13 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 101 | 11.366457 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 347 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60170.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 1.31E-39 |
| RefSeq | XP_025818177.1 | uncharacterized protein LOC112894626 [Panicum hallii] | 0 |
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 | 7.27E-22 | |
| TrEMBL | A0A2S3HZ25 | CCR4-NOT transcription complex subunit 4 OS=Panicum hallii OX=206008 GN=PAHAL_5G517200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |