Basic Information
Locus ID:
AH02.2302
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 37686761 | 37689070 | - | AH02.2302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 34,686.99 Da | 56.70 | 92.23 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 56 | 107 | 9.70803E-22 | - |
| Pfam | PF12906 | RING-variant domain | 56 | 106 | 3.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 111 | 6.18E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 120 | 6.0E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 55 | 107 | 6.7E-21 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 107 | 8.668251 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 48 | 113 | 22.271477 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 2.19E-142 |
| RefSeq | XP_004969138.1 | uncharacterized protein LOC101755158 [Setaria italica] | 9.98E-198 |
| TrEMBL | K3XKC1 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101755158 PE=4 SV=1 | 2.26E-196 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology