Basic Information
Locus ID:
AH02.2301
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Carbon catabolite repressor protein 4 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 37681757 | 37685930 | - | AH02.2301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 52,280.06 Da | 42.64 | 87.75 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 234 | 285 | 5.69013E-19 | - |
| Pfam | PF12906 | RING-variant domain | 234 | 284 | 1.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 289 | 7.95E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 297 | 1.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 233 | 285 | 6.9E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 226 | 291 | 20.013418 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 1.39E-93 |
| RefSeq | XP_025815414.1 | uncharacterized protein LOC112892474 [Panicum hallii] | 1.35E-127 |
| TrEMBL | A0A2T7DJX6 | RING-CH-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G246800 PE=4 SV=1 | 6.0E-132 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology