Basic Information
Locus ID:
AH02.2093
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 34843359 | 34851377 | - | AH02.2093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 157,654.52 Da | 42.51 | 79.62 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 609 | 858 | 2.01508E-52 | - |
| CDD | cd09076 | L1-EN | 96 | 334 | 8.93805E-39 | - |
| Pfam | PF13499 | EF-hand domain pair | 1239 | 1300 | 9.6E-9 | IPR002048 |
| Pfam | PF13202 | EF hand | 1157 | 1177 | 0.0026 | IPR002048 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 619 | 856 | 7.5E-42 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 93 | 321 | 3.01E-23 | IPR036691 |
| SUPERFAMILY | SSF47473 | EF-hand | 1074 | 1190 | 1.33E-11 | IPR011992 |
| SUPERFAMILY | SSF47473 | EF-hand | 1155 | 1306 | 4.92E-26 | IPR011992 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 542 | 836 | 2.3E-21 | IPR043502 |
| Gene3D | G3DSA:1.10.238.10 | - | 1008 | 1146 | 4.6E-6 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1238 | 1302 | 4.0E-12 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1147 | 1237 | 3.8E-9 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 654 | 831 | 5.4E-8 | IPR043128 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 93 | 335 | 1.7E-33 | IPR036691 |
| SMART | SM00054 | efh_1 | 1113 | 1141 | 21.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 1153 | 1181 | 5.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 1192 | 1220 | 4.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 1239 | 1267 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 1278 | 1306 | 10.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1155 | 1184 | 10.273304 | IPR002048 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 596 | 858 | 23.101923 | IPR000477 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1235 | 1270 | 11.444912 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1274 | 1309 | 9.241175 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1201 | 1223 | 8.599581 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 1287 | 1299 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 1248 | 1260 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 1201 | 1213 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 1162 | 1174 | - | IPR018247 |
| Coils | Coil | Coil | 1018 | 1038 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08580.1 | Calcium-binding EF hand family protein. | 4.19E-77 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| Q03278 | Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2 | 4.74E-18 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |