Basic Information
Locus ID:
AH02.2037
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CDKE-1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 34156321 | 34157406 | - | AH02.2037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 38,529.00 Da | 54.35 | 84.93 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 59 | 344 | 1.1E-55 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 348 | 6.97E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 53 | 146 | 2.6E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 147 | 358 | 2.0E-54 | - |
| SMART | SM00220 | serkin_6 | 59 | 344 | 4.5E-80 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 344 | 41.728527 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 177 | 189 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76540.1 | cyclin-dependent kinase B2;1. Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. | 4.49E-45 |
| RefSeq | XP_034594624.1 | putative cyclin-dependent kinase F-2 [Setaria viridis] | 1.76E-162 |
| Q2QSL4 | Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 | 1.93E-62 | |
| TrEMBL | A0A368R6Q9 | Protein kinase domain-containing protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_5G201200v2 PE=3 SV=1 | 2.61E-161 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0140s00005.v1.0 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.2037, AH03.435, AH04.1243, AH04.1246, AH04.1247 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G013250 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g39350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G141800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G007020, Chr17G006410 |
| Poaceae | Zea mays | 1 | Zm00001eb169760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38582, nbis-gene-38583 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18813 |