Basic Information
Locus ID:
AH02.2020
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 33910343 | 33914914 | - | AH02.2020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 87,547.40 Da | 68.17 | 60.34 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 374 | 503 | 5.00882E-63 | - |
| CDD | cd00201 | WW | 23 | 52 | 6.35207E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.3E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 179 | 348 | 1.5E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 385 | 494 | 4.6E-34 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 3.25E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 226 | 512 | 6.43E-76 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 62 | 2.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 364 | 2.5E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 536 | 3.7E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 414 | 494 | 3.1E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 5.1E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 174 | 377 | 1.1E-62 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 533 | 25.840504 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 155 | 183 | 11.488477 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.1323 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 186 | 360 | 30.339542 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 306 | 314 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 116 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 1.46E-253 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811PFH4 | DEAD-box ATP-dependent RNA helicase 14 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS25553 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology