Basic Information
Locus ID:
AH02.1933
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
beta-galactosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 32260759 | 32265627 | - | AH02.1933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.70 | 64,996.37 Da | 76.67 | 58.34 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01301 | Glycosyl hydrolases family 35 | 434 | 500 | 2.0E-4 | IPR031330 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 59 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63800.1 | Glycosyl hydrolase family 35 protein. Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35 | 2.58E-10 |
| RefSeq | XP_002457961.1 | beta-galactosidase 1 [Sorghum bicolor] | 2.33E-16 |
| Q67VU7 | Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0628500 PE=3 SV=1 | 1.64E-16 | |
| TrEMBL | A0A835E915 | beta-galactosidase OS=Digitaria exilis OX=1010633 GN=HU200_050417 PE=3 SV=1 | 2.4E-16 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||