Basic Information
Locus ID:
AH02.1868
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 30639472 | 30644823 | - | AH02.1868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 127,179.15 Da | 40.95 | 100.95 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 421 | 628 | 1.73569E-99 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 104 | 391 | 1.7025E-95 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 914 | 1103 | 4.69323E-93 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 103 | 370 | 7.2E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 753 | 842 | 8.7E-6 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 933 | 1034 | 9.0E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 450 | 580 | 7.8E-16 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 419 | 642 | 5.33E-51 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 96 | 396 | 4.71E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 753 | 898 | 1.24E-19 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 906 | 1110 | 1.17E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 440 | 682 | 7.9E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 751 | 897 | 3.3E-22 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1044 | 1126 | 2.8E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 899 | 1043 | 5.3E-40 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 76 | 400 | 1.3E-43 | IPR036640 |
| SMART | SM00382 | AAA_5 | 454 | 628 | 3.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 942 | 1096 | 6.2E-5 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 752 | 879 | 13.610221 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 430 | 651 | 19.694666 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 916 | 1119 | 9.870788 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 103 | 383 | 30.44902 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 553 | 567 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_025814508.1 | putative ABC transporter C family member 15 isoform X1 [Panicum hallii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HVF9 | ABC transporter C family member 15 OS=Panicum hallii OX=206008 GN=PAHAL_5G302000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology