Basic Information
Locus ID:
AH02.1865
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 30568485 | 30579853 | - | AH02.1865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 205,093.11 Da | 41.27 | 92.28 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1586 | 1806 | 9.49609E-118 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 1038 | 1245 | 8.2734E-95 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 751 | 1008 | 2.40083E-91 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1605 | 1753 | 1.0E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1067 | 1197 | 3.4E-16 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 739 | 987 | 1.7E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1368 | 1515 | 8.4E-11 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 751 | 1012 | 5.89E-25 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1340 | 1570 | 9.42E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1064 | 1259 | 6.81E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1578 | 1813 | 2.1E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1309 | 1569 | 1.7E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1057 | 1299 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1571 | 1825 | 5.7E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 726 | 1017 | 1.5E-39 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1614 | 1799 | 2.5E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1071 | 1253 | 2.3E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1047 | 1268 | 20.094824 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1370 | 1551 | 20.826035 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1588 | 1822 | 17.400427 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 739 | 1000 | 27.828892 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1170 | 1184 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 551 | - | - |
| Coils | Coil | Coil | 31 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UH86 | ABC transporter C family member 15 OS=Setaria viridis OX=4556 GN=SEVIR_5G186700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology