Basic Information
Locus ID:
AH02.1587
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 18696679 | 18697722 | - | AH02.1587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 37,411.58 Da | 47.10 | 58.88 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 19 | 192 | 4.1E-72 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 8 | 115 | 1.4E-36 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 117 | 190 | 4.2E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 304 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 5.88E-105 |
| RefSeq | XP_004968700.1 | ubiquitin fusion degradation protein 1 homolog [Setaria italica] | 2.5E-137 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 1.12E-61 | |
| TrEMBL | A0A1E5VMH9 | Ubiquitin fusion degradation protein 1-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012705 PE=3 SV=1 | 2.05E-143 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology