Basic Information
Locus ID:
AH02.1538
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH02 | 17843667 | 17846151 | + | AH02.1538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 71,578.32 Da | 63.65 | 66.74 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 417 | 677 | 1.2E-74 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 339 | 682 | 1.16E-100 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 333 | 700 | 6.8E-99 | IPR012334 |
| SMART | SM00710 | pbh1 | 666 | 694 | 9300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 595 | 616 | 600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 486 | 512 | 1400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 566 | 587 | 4.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 513 | 534 | 45.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 536 | 556 | 1300.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 543 | 556 | - | IPR000743 |
| PRINTS | PR01217 | Proline rich extensin signature | 148 | 169 | 7.5E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 218 | 243 | 7.5E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 94 | 110 | 7.5E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 132 | 144 | 7.5E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 198 | 215 | 7.5E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 325 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 2.55E-139 |
| RefSeq | XP_008655877.1 | polygalacturonase At1g48100 [Zea mays] | 8.69E-225 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 2.45E-138 | |
| TrEMBL | A0A3L6DSL2 | Polygalacturonase OS=Zea mays OX=4577 GN=At1g48100_3 PE=3 SV=1 | 2.04E-230 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology