Basic Information
Locus ID:
AH01.924
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 7817592 | 7818893 | - | AH01.924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 46,350.30 Da | 52.79 | 59.15 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 198 | 233 | 1.0837E-9 | - |
| Pfam | PF13696 | Zinc knuckle | 145 | 165 | 3.6E-10 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 3.0E-17 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 265 | 8.64E-10 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 142 | 188 | 1.2E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 3.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 281 | 1.2E-10 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 1.3E-30 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 13.948106 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 323 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 6.52E-43 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 1.17E-209 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 1.26E-41 | |
| TrEMBL | A0A4U6T3R5 | DWNN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G417500v2 PE=4 SV=1 | 9.28E-208 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology